Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  159 bits (401), Expect = 1e-43
 Identities = 97/318 (30%), Positives = 168/318 (52%), Gaps = 4/318 (1%)

Query: 7   RLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEGPWYV 66
           RL      +L    LNF++  A PGDPV  + A A+  ++PE +  ++   G ++    V
Sbjct: 13  RLLQALGLVLAVVVLNFVLVHAAPGDPVETI-AGASGGMSPELMAQLRTQYG-LDKSLPV 70

Query: 67  QYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGIFAAW 126
           Q   Y+  +   +LG S  F+ L V +++G     +L L  ++V+++F  G+ LG+ ++ 
Sbjct: 71  QLAVYLGKVAQGDLGYSY-FFNLPVTQMIGERLPATLLLVLSSVLLAFFAGTALGVLSSR 129

Query: 127 KRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTSWAFI 186
           K       FIT   LV  A P   + ++ +   A      P     +  +T     +A +
Sbjct: 130 KPNGWLSQFITVLSLVGFAAPVFWLGIMLVILLASVFPILPVAGMRSIDSTGAG-GFADM 188

Query: 187 KDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNYAARN 246
            DV  H VLP    S+V +  +    R++M+++L  D+I  A+ KGL++  V++ +A RN
Sbjct: 189 LDVAQHLVLPTLTLSLVYLAQYSRLARSSMLDVLGSDFIRTARAKGLADRVVLYKHALRN 248

Query: 247 ALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMTLFML 306
           ALLP VT L +  G  + G +++E +FN+PGLG + F ++  RDY  + G LL  ++ ++
Sbjct: 249 ALLPVVTVLGLQFGNVLAGAILVETVFNWPGLGRLAFESVLRRDYPTILGVLLFSSIVVV 308

Query: 307 FFNLLADMLYVVLDPRLR 324
             N L D+ Y  +DPR++
Sbjct: 309 VMNQLTDLCYRFIDPRIK 326