Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  157 bits (397), Expect = 3e-43
 Identities = 104/323 (32%), Positives = 169/323 (52%), Gaps = 15/323 (4%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           Y   R +     L + A L F++ RA  GDPV+++      Q T   I  +++  G ++ 
Sbjct: 8   YIASRAAGMLVVLAIVAVLVFVLTRAASGDPVSVLLGD---QATAADIARVQKEYG-LDK 63

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P  VQ+  +++ +L   LGTSI F    V + L      +  LA  AV I+  IG   GI
Sbjct: 64  PLPVQFGYWLREVLQGNLGTSI-FLQRPVTQALWERSEPTTLLALMAVAIAALIGVPCGI 122

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFP-TGYAYTAGTTPDWT 181
            +A  RG   D   T   ++  ++P   + ++ +  FA+   WFP +GY       PD  
Sbjct: 123 VSAVFRGRVVDQLFTGIAMLGASIPSFWLGIVLIQIFAVSFGWFPVSGYG-----APD-- 175

Query: 182 SWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFN 241
             A   +  +  VLP     ++     +   R +M+++L EDY+  A+ KGLSE+ VV  
Sbjct: 176 --APFAERLHSLVLPATVLGLLNSALIIRFTRASMLDVLGEDYVRTARSKGLSESVVVLK 233

Query: 242 YAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIM 301
           +A RNAL+P VT + +++ + IGG +I E +F  PG+G ++ +A+  RDY V+QG LL++
Sbjct: 234 HALRNALVPIVTVIGLTVALMIGGAVITETVFGLPGVGNLVVSAVLRRDYPVIQGALLVI 293

Query: 302 TLFMLFFNLLADMLYVVLDPRLR 324
               +  N   D+LY V+DPR++
Sbjct: 294 AAIYVLINFSIDLLYAVVDPRVK 316