Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  150 bits (380), Expect = 3e-41
 Identities = 99/325 (30%), Positives = 164/325 (50%), Gaps = 16/325 (4%)

Query: 1   MGYFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFV 60
           MGY +RR       + V A + F++    PGDP  ++   A    T E IE ++  LG +
Sbjct: 1   MGYIVRRFLSTLPVMAVVAVVVFLLIHLSPGDPAALI---AGDLATTEDIEKLRATLG-L 56

Query: 61  EGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVL 120
             P + Q+  ++  + T +LGTSI F  + V +LLG     ++ +A   ++I+  +   L
Sbjct: 57  NLPLWQQFTLWLGKLFTGDLGTSI-FTQVPVAQLLGQRLEPTVSIAALTMLITLVVSVPL 115

Query: 121 GIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPT-GYAYTAGTTPD 179
           G  AA++ GS  D  +    ++  +VP  ++  L +++FAI L WFP  GY   A    +
Sbjct: 116 GTLAAYRAGSWIDRLVMLFAVLAFSVPVFLVGYLLVYSFAIQLPWFPVQGYVRLADGAGE 175

Query: 180 WTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVV 239
           W             VLP    ++V I       R  ++ +L EDYI  A+ KGL    V+
Sbjct: 176 WLR---------SLVLPCVNLALVYIALVTRMTRATVLEVLHEDYIRTARAKGLGVLPVL 226

Query: 240 FNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLL 299
             +A RNA +P  T +   + + IGG ++ E +F  PG+G ++ +++   DY V+Q  LL
Sbjct: 227 -GHALRNAAIPIATTIGAGIALLIGGVVVTETVFAIPGVGRLVIDSVQRHDYPVIQSVLL 285

Query: 300 IMTLFMLFFNLLADMLYVVLDPRLR 324
           +     +  NLL D+ Y + DPR++
Sbjct: 286 LSAGVYVLINLLIDLSYRLFDPRIQ 310