Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  163 bits (413), Expect = 5e-45
 Identities = 101/329 (30%), Positives = 172/329 (52%), Gaps = 12/329 (3%)

Query: 1   MGYFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFV 60
           + + LRRL      ++  A + F++ + + GDPV  +         P++I  ++  LG +
Sbjct: 2   IAFVLRRLIQAVIVMIAVAFIAFLLFQYV-GDPVVFLLGQ---DAKPDQIRELRAALG-L 56

Query: 61  EGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVL 120
           + P++VQ+  ++ +    E G S++     V+ L+G  F  +L LA  A +++  IG  +
Sbjct: 57  DQPFFVQFWHFLVNAAQGEFGLSLR-QGAKVSRLIGERFPATLELALVAAVLALFIGIPM 115

Query: 121 GIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPD- 179
           G++ A +RG+    F     L+  ++P  +I +L +  FA+ L WFP+   +  G T   
Sbjct: 116 GVYTALRRGTFMSQFFMTVSLLGVSLPTFLIGILLILVFAVTLGWFPS---FGRGETVKF 172

Query: 180 --WTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENR 237
             WTS  F  D   H VLP    +I Q+   +  +R  M+ +L  DYI  A+ +GLS   
Sbjct: 173 GWWTSGLFSVDGWQHIVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARARGLSNRA 232

Query: 238 VVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQ 297
           + F +A +N L+P +T   + LG  I   +I E +F +PG+G +   A+T  D  V+   
Sbjct: 233 IHFGHALKNTLVPVMTITGLQLGGLIAFAIITESVFQWPGMGLLFIQAVTFADIPVMAAY 292

Query: 298 LLIMTLFMLFFNLLADMLYVVLDPRLRKG 326
           L ++ L  +  NL+ D+LY V+DPRLR G
Sbjct: 293 LCLIALIFVVINLVVDLLYFVVDPRLRVG 321