Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., ABC transporter permease from Variovorax sp. OAS795

 Score =  160 bits (404), Expect = 5e-44
 Identities = 98/326 (30%), Positives = 170/326 (52%), Gaps = 11/326 (3%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           Y LRRL      L + + + F I    PG P+    A  T  +  E ++ + +  G ++ 
Sbjct: 4   YLLRRLLQSLLLLALVSVIAFAILHLAPGGPLAQFVA--TGDLGTEDVDRLMKQYG-LDR 60

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P  +QYL +  SI T + G S +   L V + +G   G +L L  ++ +++  IG ++GI
Sbjct: 61  PVPIQYLDWAGSIATGDWGKSYRDQ-LPVLKKIGMHVGPTLELMVSSTLLAMFIGGMIGI 119

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTS 182
             A +R S +D   T G +V  ++P     +  ++ F++ L W P G   T G       
Sbjct: 120 LGAVRRYSIFDHLATIGAMVALSIPTFWFGLAVIYVFSVNLGWLPAGNRETIG------D 173

Query: 183 WAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNY 242
            +FI D   H V P    ++V    +   MR++M++++ +DYI  AK KG+   +++  +
Sbjct: 174 GSFI-DRLQHLVAPCIVLALVSTAVWSRYMRSSMLDVVNQDYIRTAKSKGVPAMQILLRH 232

Query: 243 AARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMT 302
           A RNALLP +T   + +   + G L+ E +F +PG+G +  ++++ RDY V+ G L+   
Sbjct: 233 ALRNALLPMITITGLHVSTLLSGALVTETVFTWPGMGRLFLDSVSNRDYPVVMGMLMFTA 292

Query: 303 LFMLFFNLLADMLYVVLDPRLRKGGK 328
             +L  +L+AD+LY V DPR++   K
Sbjct: 293 CMVLLGSLVADLLYSVADPRIKGASK 318