Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., ABC transporter permease subunit from Variovorax sp. OAS795

 Score =  145 bits (365), Expect = 2e-39
 Identities = 105/348 (30%), Positives = 172/348 (49%), Gaps = 35/348 (10%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQ------------------ 44
           Y L+RL      LL    L F++ + +PG PV  M +    +                  
Sbjct: 4   YILKRLLLMVPTLLGVLLLTFVVIQFVPGGPVEQMVSQLQGRDSGGERAASSGAGYRGRQ 63

Query: 45  -VTPERIEAMKQLLGFVEGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSL 103
            + PERIE +K L GF + P + ++   +KS    +LG S  +   +V +L+      S+
Sbjct: 64  GLPPERIEEIKALYGF-DKPAHERFWQMLKSFAKLDLGQSF-YQRKAVWDLVKEKLPVSI 121

Query: 104 FLAGTAVIISFSIGSVLGIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGL 163
            L      IS+ I   LG+  A + GSR+D   T  +LV  A+P  V+ +  +  F   L
Sbjct: 122 SLGLWTFFISYLIAVPLGVAKAVRAGSRFDFVTTLIVLVGYAIPGFVLGVALLVIFGGQL 181

Query: 164 SWFPTGYAYTAGTTPDWTS--W-AFIKDVGYHAVLPLFCASIVQIGGFLVNM---RNNMI 217
            WFP        T+P W +  W A I D  +H  LP+   + + +G F V     +N+ +
Sbjct: 182 QWFPL----RGLTSPSWETLGWGAKIVDYLWHIALPV---TAMVLGSFAVTAMLTKNSFL 234

Query: 218 NLLAEDYITMAKGKGLSENRVVFNYAARNALLPSVTALSMS-LGMAIGGQLIIEIIFNYP 276
             + + Y+  A+ KGL+E +V++ +  RNAL+P +T    + +G    G L+IE +F+  
Sbjct: 235 EEIRKQYVLTARAKGLAERQVLWKHVFRNALIPIITGFPAAFIGAFFTGSLLIETLFSLD 294

Query: 277 GLGTVLFNAITARDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRLR 324
           GLG + + ++  RDY V+ G L + TL  L   L++D+ YV +DPR++
Sbjct: 295 GLGLLSYESVIRRDYPVVLGTLYLFTLIGLLTKLISDLCYVWVDPRVK 342