Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., ABC transporter permease subunit from Variovorax sp. OAS795

 Score =  151 bits (381), Expect = 2e-41
 Identities = 107/341 (31%), Positives = 167/341 (48%), Gaps = 28/341 (8%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           + L R+S      +    L F + R +PGDP+  M       + P R   ++   GF + 
Sbjct: 4   FLLTRVSLLVPTFIGMTLLAFFLIRMVPGDPIETMAGERG--IDPARHAQLRTAYGF-DK 60

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P  VQY  YI  +L  +LG S+       NE L   F  ++ L   A++ +  +G   GI
Sbjct: 61  PVIVQYGIYIGRVLHGDLGKSLITQESVANEFLA-LFPATVELGVCAILFALLLGLPAGI 119

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFP--------------T 168
            AA +R S +D  +    L   ++P     +L +  F++ L W P              T
Sbjct: 120 IAAVRRNSIFDHGVMATSLTGYSMPIFWWGLLLILFFSVQLGWTPVSGRIAVQYFVEPRT 179

Query: 169 GY----AYTAGTTPDWTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDY 224
           G+    A  AG    +  W+ +    +H VLP      V +       R+ M+ +L EDY
Sbjct: 180 GFLLVDALRAGEVDAF--WSAL----HHLVLPAIVLGTVPLAVIARMTRSAMLEVLGEDY 233

Query: 225 ITMAKGKGLSENRVVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFN 284
           I  A+ KGLS  RVV  +A RNAL+P VT + + +G+   G ++ E IF++PG+G  L  
Sbjct: 234 IRTARAKGLSRLRVVGLHALRNALIPVVTVIGLQVGVLFTGAILTETIFSWPGVGKWLIE 293

Query: 285 AITARDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRLRK 325
           AI  RDY VLQG +L++   ++  NLL D+ Y +++PR+R+
Sbjct: 294 AIGRRDYPVLQGGMLLLGGIVMLVNLLVDVTYGIINPRIRR 334