Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

 Score =  156 bits (394), Expect = 8e-43
 Identities = 105/338 (31%), Positives = 165/338 (48%), Gaps = 20/338 (5%)

Query: 1   MGYFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFV 60
           + +  RRL            L F + R +PGDPV +M      +V PE      + LG +
Sbjct: 2   LSFIARRLGLLIPTFFGITLLTFALIRLIPGDPVEVMMGER--RVDPEMHAQAMERLG-L 58

Query: 61  EGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVL 120
             P  VQYL Y+  +   +LG S++       E L   F  +L LA  A++ +  +G + 
Sbjct: 59  NKPLPVQYLDYVGKLAQGDLGESLRTRESVWREFLT-LFPATLELAFAALLFAGVVGLLA 117

Query: 121 GIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFP------------- 167
           G+ AA KRGS +D  +    L   ++P     ++ +  F++ L W P             
Sbjct: 118 GVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEP 177

Query: 168 -TGYAYTAGTTPDWTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYIT 226
            TG+        D    AF KD   H +LP      + +       R++M+ +L EDYI 
Sbjct: 178 KTGFMLIDTLLSD-EEGAF-KDAVMHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIR 235

Query: 227 MAKGKGLSENRVVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAI 286
            A+ KGLS  RVVF +  RNAL+P +T   + +G  + G ++ E IF++PG+G  L  AI
Sbjct: 236 TARAKGLSPARVVFVHGLRNALIPVLTVFGLQVGTLLAGAVLTETIFSWPGIGKWLIEAI 295

Query: 287 TARDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRLR 324
            ARDY V+Q  +L++   ++  N + D+LY + +PR+R
Sbjct: 296 GARDYPVVQNGILLIACLVILVNFVVDILYGLANPRIR 333