Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 353 a.a., Inner membrane ABC transporter permease protein YejB from Pseudomonas lactucae CFBP13502

 Score =  145 bits (366), Expect = 1e-39
 Identities = 104/349 (29%), Positives = 176/349 (50%), Gaps = 34/349 (9%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAH---------------------- 40
           Y +RRL      L++   +NF+I +A PG PV    AH                      
Sbjct: 4   YIVRRLLLIIPTLVIILLVNFVIVQAAPGGPVEQAIAHLQGIGGGGVGGSSGEGIGSGSR 63

Query: 41  ATAQVTPERIEAMKQLLGFVEGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFG 100
           A+  + P+ I+ +++  GF + P   +    +KS    + G S  F   +V +L+     
Sbjct: 64  ASRGLDPKLIKDIEKQYGF-DKPAPERLWLMLKSYAQLDFGNSF-FRGKTVIDLILEKMP 121

Query: 101 WSLFLAGTAVIISFSIGSVLGIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFA 160
            ++ L   A +I++ +   LGI  A + GS +D + +  ++V  A+P  + AM  +  FA
Sbjct: 122 VTISLGLWATLITYLVSIPLGIRKAVRHGSSFDVWSSTAIVVGYAMPAFLFAMFLIVVFA 181

Query: 161 IG--LSWFPTGYAYTAGTTPDWTSWAFIKDVGYHAVLPLFCASIVQIGGFL---VNMRNN 215
            G  L+WFP      +    + ++   I D  +H VLP+   S+V IGGF    +  +N+
Sbjct: 182 GGTSLNWFPVR-GLVSENFEELSTVGKIADYFWHLVLPV--TSLV-IGGFATLTILTKNS 237

Query: 216 MINLLAEDYITMAKGKGLSENRVVFNYAARNALLPSVTALSMS-LGMAIGGQLIIEIIFN 274
            +N +   Y+  A+ KGLSE RV++ +  RNA+L  ++ +  + + +   G L+IE+IF+
Sbjct: 238 FLNEITRQYVVTARAKGLSERRVLYGHVLRNAMLLVISGIPQAFISVFFAGSLLIEVIFS 297

Query: 275 YPGLGTVLFNAITARDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRL 323
             GLG + + A  +RDY V+ G L I TLF L   L+ D+ Y ++DPR+
Sbjct: 298 LDGLGRMSYEAAVSRDYPVVFGSLFIFTLFGLLIKLIGDLCYTLVDPRI 346