Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., ABC transporter permease from Pseudomonas fluorescens SBW25

 Score =  166 bits (420), Expect = 7e-46
 Identities = 101/328 (30%), Positives = 181/328 (55%), Gaps = 11/328 (3%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           YF  RL      ++    L+F++ R  PGDP  ++   A      + IE ++Q +G ++ 
Sbjct: 6   YFSGRLVKALLMVVAVLVLSFLLIRLAPGDPALLLAGEAGVDDV-QFIEQLRQTMG-LDK 63

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P   Q L Y+ +I+  +LG S +    SV  L+      +L L G+A ++S  +G  LG+
Sbjct: 64  PLLQQLLIYLGNIVHLDLGYSYR-NQTSVWSLIAERLPATLALMGSAFVVSSVLGVTLGV 122

Query: 123 FAAWKRGSRY--DTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDW 180
            AA  R  R+  D  I+ G L++ A+P   +AML +  F++ L W P     T G   D+
Sbjct: 123 LAARARQKRHWLDGVISHGALLLYAMPPFWLAMLMILLFSVSLDWLPAFGMETVGR--DF 180

Query: 181 TSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVF 240
           +    + D   H +LP    S++ +  ++   R  +++ L ++Y+  A  KGL   R+++
Sbjct: 181 S----LLDRLRHLLLPCLSLSVLFLALYIHLTRAAVLDALGQEYVRTAHAKGLYPRRILY 236

Query: 241 NYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLI 300
            +  RNALLP VT   + LG    G L++E+++++PG+G ++++++  RDY VL G  L+
Sbjct: 237 VHVLRNALLPVVTFAGLQLGQLASGALLVEVVYSWPGIGRLMYDSLAQRDYGVLMGGFLV 296

Query: 301 MTLFMLFFNLLADMLYVVLDPRLRKGGK 328
           +++ ++ FN+L D++  +LDPR+  GG+
Sbjct: 297 ISILVVGFNVLTDVICRLLDPRIGAGGQ 324