Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  152 bits (383), Expect = 1e-41
 Identities = 105/325 (32%), Positives = 171/325 (52%), Gaps = 18/325 (5%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRA---MPGDPVTMMFAHATAQVTPERIEAMKQLLGF 59
           Y LRR +    ALLVA  ++F +      +PGDPV +M       +TPE +  M+QL G 
Sbjct: 4   YSLRRTA---QALLVAVIMSFALYNMISLLPGDPVDLML-EGNPSLTPELVAQMRQLHG- 58

Query: 60  VEGPWYVQYLTYIKSILTWELGTS-IKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGS 118
           V+ P   +Y +++ S+   ++G S   F P+S   +L  A   +  L     +IS +   
Sbjct: 59  VDQPVLTRYWSWLNSLAAGDMGYSNTHFKPVSA--VLAPALVQTSKLMILTFVISVTASI 116

Query: 119 VLGIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTP 178
           VLG  AA K G   D  I+       + P   +A++ +  FA+ L W P      A  T 
Sbjct: 117 VLGCIAAMKPGGWLDNVISFVAFACISSPAFWVALIFLMVFAVKLQWVP------ATATA 170

Query: 179 DWTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRV 238
                 F++++ Y  VLP+   ++  +G ++  +R +MI  L  D+I  A+ KGL++  V
Sbjct: 171 LDPGMGFLQELRY-LVLPVLTLTLFSMGQYIRYVRASMIETLNADFIRTARAKGLNQWTV 229

Query: 239 VFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQL 298
           +  +A RNAL+P VT +++S G  + G L++E +F   G+G  +++A+  +D+ V    +
Sbjct: 230 ISRHALRNALVPVVTLMALSFGSLMSGALVVETMFGIQGMGKAIYDAVMHKDFNVAMIGV 289

Query: 299 LIMTLFMLFFNLLADMLYVVLDPRL 323
           L  TL  LF NL+AD+ Y  LDPR+
Sbjct: 290 LFATLITLFANLVADLAYGWLDPRI 314