Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  154 bits (388), Expect = 4e-42
 Identities = 94/324 (29%), Positives = 174/324 (53%), Gaps = 10/324 (3%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           + LRRL+     ++  A + F++ + + GDPV  +        TP+++  ++  LG ++ 
Sbjct: 4   FILRRLAQAVIVMVSVAFIAFMLFQYV-GDPVVFLLGQ---DATPDQVRELRSELG-LDR 58

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P++VQ+  ++ + +  E G S++     V+ L+   F  +L L+  A +++  +G  +G+
Sbjct: 59  PFFVQFWHFLANAVQGEFGLSLR-QGAKVSRLIAERFPATLELSMVAAVLALVVGIPMGV 117

Query: 123 FAAWKRGS-RYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWT 181
           +AA +RG+     F+T  +L + ++P  +I +L +  FA+ L WFP+ +     T   W 
Sbjct: 118 YAALRRGTFMSQVFMTVSLLGV-SLPTFLIGILLILLFAVTLGWFPS-FGRGDVTQLGWW 175

Query: 182 SWAFIKDVGYHAV-LPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVF 240
           S   +   G+H + LP    +I Q+   +  +R  M+ +L  DYI  A+ +GL+   V F
Sbjct: 176 STGLLTPKGWHHITLPAITLAIFQLTLIMRLVRAEMLEVLRTDYIKFARARGLTNRAVHF 235

Query: 241 NYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLI 300
            +A +N L+P +T   + LG  I   +I E +F +PG+G +   A+T  D  V+   L +
Sbjct: 236 GHALKNTLVPVMTITGLQLGGLIAFAIITETVFQWPGMGLLFIQAVTFADIPVMAAYLCL 295

Query: 301 MTLFMLFFNLLADMLYVVLDPRLR 324
           + L  +  NL+ D+LY  +DPRLR
Sbjct: 296 IALIFVVINLIVDLLYFAVDPRLR 319