Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., dipeptide ABC transporter permease DppB from Serratia liquefaciens MT49

 Score =  159 bits (402), Expect = 9e-44
 Identities = 104/337 (30%), Positives = 170/337 (50%), Gaps = 19/337 (5%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           + LRRL       +    L F     +PGDPVT+M       ++ ER   +   +G ++ 
Sbjct: 4   FILRRLGLVIPTFIGITLLTFAFVHMIPGDPVTIMAGERG--ISAERHAQLMAEMG-LDK 60

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P Y QY +Y+ ++L  +LGTS+K   +SV +     F  +L L   A+I +  +G  +G+
Sbjct: 61  PLYQQYFSYVSNVLQGDLGTSLKSR-ISVWDEFVPRFKATLELGFCAMIFAVLVGIPVGV 119

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTG-----YAYTAGTT 177
            AA +RGS +D       L   ++P     M+ +   ++ L+  P         +   T 
Sbjct: 120 LAAVRRGSIFDHTAVGISLTGYSMPIFWWGMMLIMLVSVQLNLTPVSGRVSDTVFLDDTL 179

Query: 178 P----------DWTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITM 227
           P           W       D   H +LP      + +   +   R++M+ +L EDYI  
Sbjct: 180 PLTGFMLIDTLIWGEPGDFADAVMHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRT 239

Query: 228 AKGKGLSENRVVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAIT 287
           A+ KG+S  RV+  +A RNALLP VT + + +G  + G ++ E IF++PGLG  L +A+ 
Sbjct: 240 ARAKGVSRMRVIVVHALRNALLPVVTVIGLQVGTMLAGAILTETIFSWPGLGRWLMDALQ 299

Query: 288 ARDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRLR 324
            RDY V+QG +L++   ++  NLL D+LY V++PR+R
Sbjct: 300 RRDYPVVQGGVLLVACMIILVNLLVDVLYGVVNPRIR 336