Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., Dipeptide transport system permease protein DppB in protein degradation cluster from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  157 bits (398), Expect = 2e-43
 Identities = 102/325 (31%), Positives = 167/325 (51%), Gaps = 23/325 (7%)

Query: 1   MGYFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFA-HATAQVTPERIEAMKQLLGF 59
           + Y L+RL      LL+ A L F+    +PGDP  ++    A AQV    I  ++Q LG 
Sbjct: 2   LNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEADAQV----IALVRQQLG- 56

Query: 60  VEGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSV 119
           ++ P +VQ+  YI  +L  + GTS+      V+E +   F  +L+L  T++I +   G  
Sbjct: 57  LDQPLHVQFWHYITHVLQGDFGTSM-VSRRPVSEEIASRFLPTLWLTITSMIWAVLFGMA 115

Query: 120 LGIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPD 179
           +GI AA  R    D       +   + P   + ML M  F++ L W PT  A        
Sbjct: 116 IGIAAAVWRNRWPDRLGMTLAVTGISFPAFALGMLLMQIFSVDLGWLPTVGA-------- 167

Query: 180 WTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVV 239
             SW        H +LP                R++ +++L+EDY+  A+ KG+SE  VV
Sbjct: 168 -DSWQ-------HYILPSLTLGAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWVV 219

Query: 240 FNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLL 299
             +  RNA++P VT + +  G  +GG +++E +FN+PGLG +L +++  RDY V+Q ++L
Sbjct: 220 LKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQAEVL 279

Query: 300 IMTLFMLFFNLLADMLYVVLDPRLR 324
           + +L  +  NL+ D+LY  ++P +R
Sbjct: 280 LFSLEFILINLVVDVLYAAINPAIR 304