Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  153 bits (386), Expect = 7e-42
 Identities = 105/338 (31%), Positives = 170/338 (50%), Gaps = 21/338 (6%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           + LRRL       +    L F     +PGDPV +M       ++PER   +   LG ++ 
Sbjct: 4   FILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERG--ISPERHAQLLAELG-LDK 60

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P + QYL YI  ++  +LG S+K   + V +     F  +L L   A+I + ++G  +G+
Sbjct: 61  PMWQQYLHYIWGVMHGDLGISLKSR-IPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGV 119

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTG-----YAYTAGTT 177
            AA KRGS +D       L   ++P     M+ +   ++  +  P         +   T 
Sbjct: 120 LAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDTN 179

Query: 178 P-------DWTSWA----FIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYIT 226
           P       D   W     FI D   H +LP      + +   +   R++M+ +L EDYI 
Sbjct: 180 PLTGFMLIDTAIWGEEGNFI-DALAHMILPAMVLGTIPLAVIVRMTRSSMLEVLGEDYIR 238

Query: 227 MAKGKGLSENRVVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAI 286
            A+ KGL+  RV+  +A RNA+LP VT + + +G  + G ++ E IF++PGLG  L +A+
Sbjct: 239 TARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDAL 298

Query: 287 TARDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRLR 324
             RDY V+QG +L++   ++  NLL D+LY V++PR+R
Sbjct: 299 QRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336