Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  150 bits (380), Expect = 3e-41
 Identities = 90/322 (27%), Positives = 152/322 (47%), Gaps = 20/322 (6%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           + LRR       L +  T++F + R  PG P T        +  P  + A  +    +  
Sbjct: 4   FILRRCLEAIPTLFILITISFFMMRLAPGSPFT------GERALPPEVLANIEAKYHLND 57

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P   QY +Y+K +   + G S K+   +VN+L+  +F  S  L   A +++  IG   G+
Sbjct: 58  PIMTQYFSYLKQLAHGDFGPSFKYKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGV 117

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTS 182
            AA K+ +R+D  +    +    +P  V+A L +  FAI L W P G          W  
Sbjct: 118 IAALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQWLPGG---------GWNG 168

Query: 183 WAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNY 242
            A         +LP+   S+  I       R +MI +L  ++I  A+ KGL   R++F +
Sbjct: 169 GAL-----KFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRH 223

Query: 243 AARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMT 302
           A + ALLP ++ +  +    I G ++IE I+  PG+G +  N    RDY ++    +++ 
Sbjct: 224 ALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVG 283

Query: 303 LFMLFFNLLADMLYVVLDPRLR 324
              + FN + D+LY V+DP++R
Sbjct: 284 ALTILFNAIVDVLYAVIDPKIR 305