Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Erwinia tracheiphila SCR3

 Score =  144 bits (363), Expect = 3e-39
 Identities = 94/322 (29%), Positives = 149/322 (46%), Gaps = 20/322 (6%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           + LRR+      LL+  T++F + R  PG P T       A      IEA   L      
Sbjct: 4   FILRRVLEAIPTLLILITISFFMMRLAPGSPFTG--ERTLAPEVMANIEAKYHL----ND 57

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P + QY  Y+  +   + G S K+   SVN L+G AF  S  L   A I++  +G   G+
Sbjct: 58  PIWKQYTDYLVQLAHGDFGPSFKYKDYSVNYLVGHAFPVSAKLGLAAFILAIILGVAAGV 117

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTS 182
            AA K+ S++D  +    +    +P  V+A L +  FAI L W P G          W  
Sbjct: 118 IAALKQNSKWDFVVMGVAMTGVVIPSFVVAPLLVLIFAIALKWLPGG---------GWNG 168

Query: 183 WAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNY 242
                      +LP+   S+  I       R +MI +L  ++I  A+ KGL    +V  +
Sbjct: 169 GQL-----KFMILPMVALSLSYIASIARITRGSMIEVLHSNFIRTARAKGLPMRLIVLRH 223

Query: 243 AARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMT 302
           A + A+LP ++ L  +    I G ++IE I+  PG+G +  N    RDY ++    +++ 
Sbjct: 224 ALKPAMLPVLSYLGPAFVGIITGSMVIESIYGLPGIGQLFVNGALNRDYSLVLSLTILVG 283

Query: 303 LFMLFFNLLADMLYVVLDPRLR 324
              + FN + D+LY V+DP++R
Sbjct: 284 FLTILFNAIVDVLYAVIDPKIR 305