Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., dipeptide ABC transporter permease DppB from Erwinia tracheiphila SCR3

 Score =  154 bits (388), Expect = 4e-42
 Identities = 103/339 (30%), Positives = 170/339 (50%), Gaps = 23/339 (6%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           + LRRL       +    L F     +PGDPV +M       ++PER   +   +G ++ 
Sbjct: 4   FILRRLGLVIPTFIGITLLTFAFVHMIPGDPVLIMAGERG--MSPERHAQLLAQMG-LDK 60

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P + QY+ YI+ +L  +LG S+K   + V +     F  +L L   A+I + ++G  +G+
Sbjct: 61  PLWQQYIAYIQGVLHGDLGISLKSR-IPVWQEFVPRFKATLELGICAMIFAIAVGIPVGV 119

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFP--------------- 167
            AA KRGS +D       L   ++P     M+ +   ++ L+  P               
Sbjct: 120 LAAVKRGSIFDHTAVGISLTGYSMPIFWWGMMLIMLVSVQLNLTPVAGRIGDTVFLDDSK 179

Query: 168 --TGYAYTAGTTPDWTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYI 225
             TG+      T  W     +KD   H +LP      + +   +   R+ M+ +L EDYI
Sbjct: 180 PLTGFMLI--DTLLWGEPGDVKDAVMHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYI 237

Query: 226 TMAKGKGLSENRVVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNA 285
             A+ KGL+  RV+  +A RNA+LP VT + + +G  + G ++ E IF++PGLG  L +A
Sbjct: 238 RTARAKGLTPLRVIVVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDA 297

Query: 286 ITARDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRLR 324
           +  RDY V+Q  +L++   ++  NLL D+LY V++PR+R
Sbjct: 298 LQRRDYPVVQSGVLMVATLIILVNLLVDLLYGVVNPRIR 336