Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  147 bits (371), Expect = 3e-40
 Identities = 89/319 (27%), Positives = 166/319 (52%), Gaps = 11/319 (3%)

Query: 6   RRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEGPWY 65
           RRL      L   + + F++ +  PGDPV    A+ T ++ PE IE ++Q LG ++ P  
Sbjct: 7   RRLLQLLPMLFFISLVAFLLVKLAPGDPVA---AYITPRMAPEDIERIRQSLG-LDKPLV 62

Query: 66  VQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGIFAA 125
            QY+ ++K++L  +LG S+  Y   V E++G     +L L G +++++  +   LG+ A 
Sbjct: 63  TQYVLWLKNVLRGDLGYSL-IYHRPVLEMIGERIPATLGLMGASLLMAIVLAIPLGLLAG 121

Query: 126 WKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTSWAF 185
             +    D  +     +  +VP     +L +  FA+ L+WFP+    T G   +      
Sbjct: 122 AFKHRWLDHLLNLFAYIGISVPIFWFGILLITVFAVQLNWFPSMGMRTIGMEDNGL---- 177

Query: 186 IKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNYAAR 245
             D+  H VLP    +   +  ++  +R+N I+ L+ DY+      G + + ++F +  +
Sbjct: 178 --DLLRHGVLPCIALTFYNLSSYVRYIRSNTISQLSADYVQTQLAYGATRSSILFRHVLK 235

Query: 246 NALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMTLFM 305
           N LLP +T   +S G  I G  + E +F++PG+G +   +I + DY ++   +++ ++ +
Sbjct: 236 NVLLPVITLFGLSFGELIVGAYVTESVFSWPGMGLLGIQSIASLDYPLIMAIIMLSSMML 295

Query: 306 LFFNLLADMLYVVLDPRLR 324
           +  NL+AD+LY   DPR+R
Sbjct: 296 IVGNLIADVLYRFADPRIR 314