Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  145 bits (366), Expect = 1e-39
 Identities = 92/324 (28%), Positives = 160/324 (49%), Gaps = 21/324 (6%)

Query: 1   MGYFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFV 60
           + Y  +RL      LL+ A L F+    +PGDP  ++   A  +     I+ +++ LG +
Sbjct: 2   LNYVCKRLLGLIPTLLIVAVLVFLFVHMLPGDPARLV---AGPEADATVIDLVRKQLG-L 57

Query: 61  EGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVL 120
           + P Y+Q++ YI ++L  + G S+      V+E +   F  + +L   ++  +   G   
Sbjct: 58  DQPLYMQFIHYICNVLQGDFGISM-VSRRPVSEEIASRFMPTFWLTIASMCWAVVFGLGA 116

Query: 121 GIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDW 180
           GI AA  R    D       +   + P   + ML M  F++ L W PT  A         
Sbjct: 117 GIIAAVWRNRWPDKLGMALAVTGISFPAFALGMLLMQIFSVELGWLPTVGA--------- 167

Query: 181 TSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVF 240
                  D   H +LP                R + +++L+EDYI  A+ KG+SE  V+ 
Sbjct: 168 -------DTWKHYILPSMTLGAAVSAVMARFTRASFVDVLSEDYIRTARAKGVSEKWVIL 220

Query: 241 NYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLI 300
            +  RNA++P VT + +  G  +GG +++E +FN+PGLG +L +++  RDY V+Q ++L+
Sbjct: 221 KHGFRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLL 280

Query: 301 MTLFMLFFNLLADMLYVVLDPRLR 324
            +L  +  NL+ D+LY  ++P +R
Sbjct: 281 FSLEFILINLVVDVLYAAINPAIR 304