Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Escherichia coli ECRC62

 Score =  145 bits (366), Expect = 1e-39
 Identities = 88/322 (27%), Positives = 150/322 (46%), Gaps = 20/322 (6%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           + LRR       L +  T++F + R  PG P T        +  P  + A  +    +  
Sbjct: 4   FILRRCLEAIPTLFILITISFFMMRLAPGSPFT------GERTLPPEVMANIEAKYHLND 57

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P   QY +Y+K +   + G S K+   SVN+L+  +F  S  L   A  ++  +G   G+
Sbjct: 58  PIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGV 117

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTS 182
            AA K+ +++D  +    +    +P  V+A L +  FAI L W P G          W  
Sbjct: 118 IAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLPGG---------GWNG 168

Query: 183 WAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNY 242
            A         +LP+   S+  I       R +MI +L  ++I  A+ KGL   R++  +
Sbjct: 169 GAL-----KFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRH 223

Query: 243 AARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMT 302
           A + ALLP ++ +  +    I G ++IE I+  PG+G +  N    RDY ++    +++ 
Sbjct: 224 ALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVG 283

Query: 303 LFMLFFNLLADMLYVVLDPRLR 324
              + FN + D+LY V+DP++R
Sbjct: 284 ALTILFNAIVDVLYAVIDPKIR 305