Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., dipeptide/heme ABC transporter permease from Escherichia coli BL21

 Score =  152 bits (385), Expect = 9e-42
 Identities = 104/339 (30%), Positives = 168/339 (49%), Gaps = 23/339 (6%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           + LRRL       +    L F     +PGDPV +M       ++PER   +   LG ++ 
Sbjct: 4   FILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERG--ISPERHAQLLAELG-LDK 60

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P + QYL YI  ++  +LG S+K   + V E     F  +L L   A+I + ++G  +G+
Sbjct: 61  PMWQQYLHYIWGVMHGDLGISMKSR-IPVWEEFVPRFQATLELGVCAMIFATAVGIPVGV 119

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFP--------------- 167
            AA KRGS +D       L   ++P     M+ +   ++  +  P               
Sbjct: 120 LAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSN 179

Query: 168 --TGYAYTAGTTPDWTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYI 225
             TG+      T  W       D   H +LP      + +   +   R++M+ +L EDYI
Sbjct: 180 PLTGFMLI--DTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYI 237

Query: 226 TMAKGKGLSENRVVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNA 285
             A+ KGL+  RV+  +A RNA+LP VT + + +G  + G ++ E IF++PGLG  L +A
Sbjct: 238 RTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDA 297

Query: 286 ITARDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRLR 324
           +  RDY V+QG +L++   ++  NLL D+LY V++PR+R
Sbjct: 298 LQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336