Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  143 bits (361), Expect = 5e-39
 Identities = 98/325 (30%), Positives = 159/325 (48%), Gaps = 12/325 (3%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           + ++RL      +L  A + F+I R + GDPV +M    T+Q   E   A+++ LG  + 
Sbjct: 4   FIIKRLGNAVLVMLSVALIAFLIFR-LAGDPVELMVGEQTSQ---EDRAALRERLGLNDS 59

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
               QYL ++K       G S +     V  L+   F  +L L   A +IS  +G  LG+
Sbjct: 60  -LPTQYLRFVKDAAQGNFGVSYR-NGQQVLPLIAERFPATLELVLVATVISLVVGLPLGV 117

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPD--W 180
             A +RG  Y   +    +V  ++P  V+ +L +  F++ L W P   A+  G      W
Sbjct: 118 LTAIRRGKWYTEGLQFLSIVGVSLPSFVVGILLILVFSVSLGWAP---AFGRGDVVQLGW 174

Query: 181 TSWAFIKDVGYHA-VLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVV 239
            S   +   G  A +LP    S+ QI   +  +R  M+ +L  D++  A+ +G+   R+ 
Sbjct: 175 WSTGLLTSSGRAALILPAIALSLYQITLVMRLVRAEMLEVLRSDFVKFARARGIPRWRIY 234

Query: 240 FNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLL 299
           F +A RN L+P VT  +M++G  I   LI E +F +PG+G +   A+T  D  V+   L 
Sbjct: 235 FRHALRNCLMPVVTLTTMNVGSLIAFALITETVFQWPGMGMLFIQAVTFLDIPVMAAYLC 294

Query: 300 IMTLFMLFFNLLADMLYVVLDPRLR 324
           I++   +  N   D+ Y V+DPRLR
Sbjct: 295 IISFIFVVLNTFVDIAYAVIDPRLR 319