Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  144 bits (363), Expect = 3e-39
 Identities = 91/329 (27%), Positives = 163/329 (49%), Gaps = 15/329 (4%)

Query: 1   MGYFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFV 60
           +   +RRL      L   + + +++   +PGDP  +M        +P+ + A+++ +G +
Sbjct: 2   LAVLIRRLVSLIITLFAVSLIIYVVMGLLPGDPAAIMLG---TSASPDTLAALQKQMG-L 57

Query: 61  EGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVL 120
           + P  ++YL ++  +   +LG S   Y + V  L+      +L LA  A+ +S +I   L
Sbjct: 58  DQPLPLRYLHWLAGVFRGDLGQSYT-YGVPVAGLIIERLAVTLPLALLAIFLSVTIAIPL 116

Query: 121 GIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDW 180
           G+ AA  R    D        V  AVP   + +L +  F+  L W P+G          +
Sbjct: 117 GVAAAQNRNGALDFAAGLFSHVGIAVPGFWVGLLLIIVFSTTLGWMPSG---------GF 167

Query: 181 TSWAFIKDVGYHA-VLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVV 239
             W+     G  A VLP    ++ Q G      R+ ++ ++ ED++  A+ KGLSE   +
Sbjct: 168 PGWSPSFSAGLVALVLPAIALALSQAGVLTRVCRSAVLEVMNEDFVRTARAKGLSERVAL 227

Query: 240 FNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLL 299
           + +A  NA++P VT + +     I G +++E +FN PGLG + + A+T RD  V+Q  +L
Sbjct: 228 WRHAVPNAMIPVVTMIGLQFTFLIAGAVLVENVFNLPGLGRLAYQALTQRDIVVMQSVVL 287

Query: 300 IMTLFMLFFNLLADMLYVVLDPRLRKGGK 328
             +  ++  N + D+ Y+ +DPRLR G +
Sbjct: 288 FFSALVIIMNFVVDIAYLFIDPRLRAGAR 316