Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  149 bits (376), Expect = 9e-41
 Identities = 98/334 (29%), Positives = 170/334 (50%), Gaps = 16/334 (4%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           +   +L +     L    + F   R +PGDPV +M       ++PER   + + LGF + 
Sbjct: 4   FIFGKLLYLVPTFLGITIVAFAFVRVLPGDPVLLMAGERG--ISPERHAQLAEQLGFAQP 61

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
            W  QYL ++  +L  +LG S+      + E L   F  ++ L   A+II+  IG  +G+
Sbjct: 62  IWE-QYLHFLGRLLQGDLGNSLVTKKPVLTEFLA-LFPATVELGLVAIIIATVIGVPVGV 119

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFP-TGYAYTAGTTPDWT 181
            AA +RGS +D       LV  ++P     +L +  F+  L W P +G        P  T
Sbjct: 120 IAAIRRGSWFDQISMTTALVGFSMPIFWWGLLLIIMFSGILQWTPVSGRISLMYFFPSVT 179

Query: 182 SWAFIKDVGY-----------HAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKG 230
            +  I  +             H +LP    + + +       R+ M+ +L EDY+  A+ 
Sbjct: 180 GFMLIDSLISGQKGAFASALSHLILPSVVLATIPLAVIARQTRSAMLEVLGEDYVRTARA 239

Query: 231 KGLSENRVVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARD 290
           KG+S +RVV  +A RNA++P +T + + +G+ + G ++ E IF++PG+G  + ++I+ RD
Sbjct: 240 KGMSASRVVGIHALRNAMIPVITTIGLQIGVLMAGAILTETIFSWPGIGKWMIDSISRRD 299

Query: 291 YQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRLR 324
           Y V+Q  LL++   ++  NLL D+ Y +++PR+R
Sbjct: 300 YPVVQSGLLLIAGLVMVVNLLVDLTYGLINPRIR 333