Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., putative D,D-dipeptide transport system permease protein DdpC from Xanthobacter sp. DMC5

 Score =  120 bits (302), Expect = 3e-32
 Identities = 74/241 (30%), Positives = 123/241 (51%), Gaps = 4/241 (1%)

Query: 69  LATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSA 128
           LA+D         A H  GT  +GRD++S+V   +R+ +A+   +   V  +  V G+++
Sbjct: 58  LASDTAAALQPPSAAHWFGTDNLGRDIFSRVVVASRLDMAIAIFSVALVFAVGGVAGIAS 117

Query: 129 GYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGARVVRS 188
           G+FGG  D  +    + ++  P + L   + A +G      I +     ++    RV +S
Sbjct: 118 GFFGGWTDRIIGRISDTIMAFPLFVLAMGIVAALGNT-VTNIVIATAIINFPLYVRVAKS 176

Query: 189 QTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGL 248
           +    R   +V+AA + G S WRI+   ILPN++ I+      ++ YAI+  A +SF+GL
Sbjct: 177 EAAIRRNAGYVQAARLTGNSEWRILLTTILPNIMPIMMVQMSLTMGYAILNAAGLSFIGL 236

Query: 249 G-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQLR 307
           G  P T  WGIM+   + S+ ++ G WW  L P L+L   V    LL   + +I +PQ R
Sbjct: 237 GVRPPTPEWGIMV--AEGSAYIVSGEWWIALFPGLALMFAVFCFNLLGDGLRDIVDPQRR 294

Query: 308 S 308
           +
Sbjct: 295 T 295