Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., nickel ABC transporter permease from Pseudomonas simiae WCS417

 Score =  117 bits (294), Expect = 3e-31
 Identities = 90/306 (29%), Positives = 140/306 (45%), Gaps = 40/306 (13%)

Query: 3   ALWKL-----LRGNRM-AMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKA 56
           A W+L     LR  R+ A  G+ IL  + +LA+ AP +  ++P                 
Sbjct: 8   APWRLRLRFGLRNGRLTAAWGLLILLAWLVLALFAPWIAPYDP----------------- 50

Query: 57  AKANPDGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGIT 116
                   IA+N  TD   L  S    H  GT   GRD+ S+V +GAR+ L +     I 
Sbjct: 51  --------IAQN--TDFSLLGPSLA--HPFGTDNYGRDILSRVIWGARIDLQLAIVGVIF 98

Query: 117 VCFLATVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGC 176
              + T IG  +GY GG+ D      ++++L  P   L+  + A +G  G  +  + +  
Sbjct: 99  PFMIGTFIGAVSGYIGGRFDSVCMRVIDVILAFPFLVLMLAIMAILG-PGLKSFYIAMAL 157

Query: 177 TSWAWGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYA 236
             W   AR++RSQ + L+E +F  AA+ LG    RI+F  +LPN +       +   +  
Sbjct: 158 VGWVSYARLIRSQILVLKESDFALAAKSLGFGHGRILFRHLLPNAMFGSIVFSMSDAVLV 217

Query: 237 IMMEATISFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLN 295
           ++  A +S+LGLG  P T  WG M   V    + +  AWW    P L++  L  G +LL 
Sbjct: 218 LLNGAAVSYLGLGVQPPTAEWGTM---VAEGQAFITTAWWICTFPGLAIVTLAMGFSLLA 274

Query: 296 FAVDEI 301
             V ++
Sbjct: 275 DGVAQV 280