Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  160 bits (404), Expect = 5e-44
 Identities = 109/305 (35%), Positives = 156/305 (51%), Gaps = 33/305 (10%)

Query: 3   ALWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPD 62
           AL   LR N  A+ GV +L    +LA+ APLL   +P      P  +P            
Sbjct: 53  ALRAFLR-NPAAVAGVVLLVCMLILALLAPLLYPGDPLDMVAPPLLWPG----------- 100

Query: 63  GWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLAT 122
                            + A + LG+  +GRDV + +A+GARVSLAVG  A +    +  
Sbjct: 101 -----------------QDAAYPLGSDSLGRDVIAGIAHGARVSLAVGVVAAVLSLVIGV 143

Query: 123 VIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWG 182
           ++G +AGYFGG+IDD L     +   +P +  + V+ A IG+     I   IG  SW   
Sbjct: 144 LVGATAGYFGGRIDDVLVRITELFQTMPSFLFVIVVVA-IGQPSVPVIVCAIGLASWPVI 202

Query: 183 ARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEAT 242
           AR+VR++  ALRE EFV AA   G S  RIIF E+LPN +  V  +    V  AI++E+ 
Sbjct: 203 ARLVRAEFRALRETEFVLAARSQGFSHARIIFQEMLPNALPPVIVTTSVLVASAILIESA 262

Query: 243 ISFLGLGDPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIA 302
           +SFLG+GDPN +SWG M   +     +L  AW+    P  ++ L V  L L+   +++  
Sbjct: 263 LSFLGMGDPNAVSWGSM---IGQGRELLRTAWYLTALPGAAIVLTVLALNLVGDGLNDAF 319

Query: 303 NPQLR 307
           NP+LR
Sbjct: 320 NPRLR 324