Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., Dipeptide ABC transporter, permease protein DppC (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  127 bits (319), Expect = 4e-34
 Identities = 87/310 (28%), Positives = 148/310 (47%), Gaps = 32/310 (10%)

Query: 1   MKALWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKAN 60
           ++  W     NR A+IG+  + L  L+A+ AP +  H P++              A    
Sbjct: 20  LREFWAAFSANRGAVIGLVTIILLMLVAMFAPWIAPHAPNETNS-----------AVFLQ 68

Query: 61  PDGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFL 120
           P  W                   ++LGT  +GRD+ S++ YGAR+SL++G         +
Sbjct: 69  PPAW------------QQGGSTSYLLGTDAIGRDILSRLMYGARLSLSIGVAVVALSVVV 116

Query: 121 ATVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWA 180
             V+G+ AG+F G ++  +   M+I+L +P   L  V+ A +G  G +   L +      
Sbjct: 117 GVVLGLIAGFFRGVLEIAIMRLMDIVLTLPSLLLAIVIVAILG-PGLVNAMLAVAIVVLP 175

Query: 181 WGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLIS--IVGASFIGSVMYAIM 238
              R+ R+  +A   +++V AA V G  + R++F E+LPN  +  IV AS    +  AI+
Sbjct: 176 HYVRITRAAVIAEVSRDYVTAARVSGAGTLRLMFREVLPNCAAPLIVQASL--GISTAIL 233

Query: 239 MEATISFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFA 297
             A + FLGLG  P +  WG ML + +     ++ AWW +  P L++ + V    LL   
Sbjct: 234 DAAALGFLGLGAQPPSPEWGTMLADAR---EFVLRAWWVVTFPGLAILMAVLAFNLLGDG 290

Query: 298 VDEIANPQLR 307
           + +  +P+L+
Sbjct: 291 LRDALDPKLK 300