Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  143 bits (361), Expect = 5e-39
 Identities = 97/311 (31%), Positives = 149/311 (47%), Gaps = 42/311 (13%)

Query: 1   MKALWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKAN 60
           M+AL   LR N  A+ G+ +L +   +A+A P +   +P            F +KAA   
Sbjct: 29  MEALRMFLR-NPAAIAGMAMLLIVLAVAIAGPWVYPADP------------FEIKAAPLT 75

Query: 61  P----DGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGIT 116
           P    D W                     LG+  +GRDV + + YG R +L VG  A + 
Sbjct: 76  PPFSEDAW---------------------LGSDYLGRDVLTALIYGGRATLLVGAVAALL 114

Query: 117 VCFLATVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGC 176
              +   +G  AGY+GGKID  L        V+P      V+         +T+ L IG 
Sbjct: 115 SVLIGITLGAFAGYYGGKIDAALMKLTEFFQVLPALLFAMVVVTLFSPT-LVTVTLAIGI 173

Query: 177 TSWAWGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYA 236
            SW   AR+ R++ M  R  EFV+A   +G    RII+  ILPN +  +  S   ++  A
Sbjct: 174 VSWTGTARLTRAEFMKYRGLEFVRAERAIGAGDARIIWKVILPNALPPLVVSATLAIGAA 233

Query: 237 IMMEATISFLGLGDPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNF 296
           I+ EA +SFLGLGDPN +SWG+M   + +S   ++  WW +  P  ++ + V  ++L+  
Sbjct: 234 ILFEAGLSFLGLGDPNQMSWGLM---IGSSRQYVLSCWWAVAFPGAAIFITVLAVSLIGD 290

Query: 297 AVDEIANPQLR 307
            +++  NP+LR
Sbjct: 291 GLNDALNPKLR 301