Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  129 bits (324), Expect = 9e-35
 Identities = 98/304 (32%), Positives = 157/304 (51%), Gaps = 41/304 (13%)

Query: 8   LRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGWIAE 67
           L   R+ M+   +L +  ++A+ APL  S +P+                     D  + E
Sbjct: 5   LMHRRIVMVSALVLLVIAVMAIGAPLFASADPN---------------------DTAVLE 43

Query: 68  NLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVS 127
            L         +  A+H+LGT  +GRD++S++ +GAR SLA+     +      TV+G+ 
Sbjct: 44  RLK--------APSAEHLLGTDELGRDMYSRIVHGARYSLAIAALTALGAVVAGTVLGLM 95

Query: 128 AGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTI-ALIIGCTSWAWGARVV 186
           AG+F  ++D  L   ++ M+  P   L   L A +G +   T+ AL++  T     ARVV
Sbjct: 96  AGFFR-RLDAPLMRVVDAMMSFPDILLAIALVAILGPSLVNTVLALVLVYTPRV--ARVV 152

Query: 187 RSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLIS--IVGASFIGSVMYAIMMEATIS 244
           R+ T+ +RE  FV+A   LG  + RI++  ILPNL+S  +V  SFI +  YAI+ EA +S
Sbjct: 153 RASTLVVRELLFVEAVRALGVRTSRILWRHILPNLMSPILVQVSFIFA--YAILAEAGLS 210

Query: 245 FLGLGDPNTI-SWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIAN 303
           FLG+G P  I +WG M+   Q  +     A+W +L P L++      L LL   V ++ +
Sbjct: 211 FLGVGVPPEIPTWGTMVAGSQQYAHQ---AFWVVLFPGLAIIFTALSLQLLGDGVRDLLD 267

Query: 304 PQLR 307
           P+L+
Sbjct: 268 PKLK 271