Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  130 bits (327), Expect = 4e-35
 Identities = 93/273 (34%), Positives = 134/273 (49%), Gaps = 26/273 (9%)

Query: 45  NPHEYPAFVVKAAKANPDGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGAR 104
           NP +  A  +  A+  P  W AE              + ++LGT   GRD+ S V YGAR
Sbjct: 47  NPFDLAALELGDARL-PPAWSAEG------------SSKYLLGTDDQGRDILSAVIYGAR 93

Query: 105 VSLAVGFGAGITVCFLATVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVL------ 158
           +SL VG  + +    +  V+G+ AG+FGG +D FL    ++ML  P  P+L  L      
Sbjct: 94  ISLIVGLVSVVLSVVVGVVLGLLAGFFGGWLDSFLMRVCDVMLSFP--PILVALLIAGVG 151

Query: 159 -AAFIGEAGPLTIALII---GCTSWAWGARVVRSQTMALREKEFVKAAEVLGESSWRIIF 214
            A F G    L   ++I     T W   AR VR  T+  R KE+V+AA V G +  RI+ 
Sbjct: 152 RALFPGAHESLAFGVLIVSISLTGWVQYARTVRGSTLVERNKEYVQAARVTGVAPMRIML 211

Query: 215 IEILPNLISIVGASFIGSVMYAIMMEATISFLGLGDPNTISWGIMLYNVQTSSSMLIGAW 274
             +LPN++  V       V  AI+ EAT+SFLG+G P T      L ++  +  +  G W
Sbjct: 212 RHVLPNVLGPVTVLATIQVATAIITEATLSFLGVGVPPTSPSLGTLISI-GNQYLFSGEW 270

Query: 275 WELLAPCLSLTLLVTGLALLNFAVDEIANPQLR 307
           W  + P L L L+   + LL   + +  NP+LR
Sbjct: 271 WITVFPGLMLVLIALSVNLLGDWLRDALNPRLR 303