Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  135 bits (339), Expect = 2e-36
 Identities = 91/301 (30%), Positives = 154/301 (51%), Gaps = 29/301 (9%)

Query: 11  NRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGWIAENLA 70
           +R+A+ G+ +LG+  L A+ AP +T         NP++     V  A+  P    +E   
Sbjct: 23  SRIAIGGLVVLGIVVLAALLAPWITPQ-------NPYDLLQLDVLDARLPPGSHSSEGGY 75

Query: 71  TDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGY 130
           T            + LGT   GRD++S + YG R+SL VG G+ +    + T++G+ A Y
Sbjct: 76  T------------YWLGTDGQGRDLYSAIVYGLRISLTVGVGSALIAAVVGTLVGLIAAY 123

Query: 131 FGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGARVVRSQT 190
            GGK+D  L   ++++L  P   +  ++ A++G+ G   + L +    WA+ AR  R Q 
Sbjct: 124 AGGKVDALLMRLVDLLLSFPTILMALMILAYVGK-GVGNVMLTLVLLEWAYYARTARGQA 182

Query: 191 MALREKEFVKAAEVLGESSWRIIFIEILPNLIS---IVGASFIGSVMYAIMMEATISFLG 247
           +    +E+V AA+  G   WRI+   ILPN +    ++GA     +  AI +EAT+SFLG
Sbjct: 183 LVEARREYVDAAQGQGIPRWRIVTGHILPNCLPPLLVIGAL---QIARAITLEATLSFLG 239

Query: 248 LGDPNT-ISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQL 306
           LG P T  S G+++ N      +L   +W    P ++L   +  + L+   + ++ NP+L
Sbjct: 240 LGVPITEPSLGLLISN--GYQYLLSNEYWISFFPGVALLAAIVAINLVGDQLRDVLNPRL 297

Query: 307 R 307
           +
Sbjct: 298 Q 298