Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  131 bits (329), Expect = 2e-35
 Identities = 89/291 (30%), Positives = 141/291 (48%), Gaps = 40/291 (13%)

Query: 2   KALWKLLR----GNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAA 57
           ++LW+  R     N+ AM+ + +L L  L  V  P+ +++  +                 
Sbjct: 23  RSLWQDARIRFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYED---------------- 66

Query: 58  KANPDGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITV 117
                        TD   +     A+H  GT  +GRD++ +   G R+SL VG    +  
Sbjct: 67  -------------TDWYAMHAGPSAEHWFGTDALGRDLFVRTLVGGRISLMVGIMGALVA 113

Query: 118 CFLATVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCT 177
             + T+ G ++G+ GG+ D  +   + I+  IP   L+ VL  F G    + I + IG  
Sbjct: 114 VLIGTLYGAASGFIGGRTDRVMMRILEILYAIPFMFLVIVLVTFFGR-NIVLIFVAIGAI 172

Query: 178 SWAWGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAI 237
           +W   AR+VR QT++LR KEF++AA V G S W II   I+PN++ IV       +   I
Sbjct: 173 AWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMI 232

Query: 238 MMEATISFLGLG--DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTL 286
           + E+ +SFLGLG  +P T SWG +L   Q  ++ +  A W+LL P   + L
Sbjct: 233 LTESFLSFLGLGVQEPMT-SWGALL---QEGANTMEVAIWQLLFPAAFMVL 279