Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  142 bits (359), Expect = 9e-39
 Identities = 105/314 (33%), Positives = 162/314 (51%), Gaps = 35/314 (11%)

Query: 4   LWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDG 63
           L+  LR +++AM    +  LF ++A++APL+          NP++  +  +  A+  P  
Sbjct: 20  LYYFLR-DKVAMSSFAVFVLFVIVAISAPLIAPT-------NPYDLSSIDIMDAEL-PPS 70

Query: 64  WIAENLATDRRTLAMSKKADH-ILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLAT 122
           W             M    +H +LGT   GRD++S + YG+R+SL +GF A      L  
Sbjct: 71  W-------------MEGGNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGI 117

Query: 123 VIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAA---------FIGEAGPLTIALI 173
           VIG+SAGYFGG+ID FL    +I L      +  +++A         F  +   + + +I
Sbjct: 118 VIGLSAGYFGGRIDSFLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVI 177

Query: 174 IGCTSWAWGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSV 233
           IG   W   AR VR+  +A ++KE+V+AA V+G  + RI+F  ILPN +S +       V
Sbjct: 178 IGVAEWPQYARTVRASVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQV 237

Query: 234 MYAIMMEATISFLGLGDP-NTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLA 292
             AIM EA +SFLGLG P +  S G ++    T   +  GAWW    P + L LLV  + 
Sbjct: 238 ANAIMSEAALSFLGLGLPVDQPSLGSLISIGFT--YIFSGAWWITAFPGIVLVLLVLVIN 295

Query: 293 LLNFAVDEIANPQL 306
           LL   + ++ NP++
Sbjct: 296 LLGDWLRDVFNPKI 309