Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., putative Opine ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  147 bits (370), Expect = 4e-40
 Identities = 100/311 (32%), Positives = 165/311 (53%), Gaps = 40/311 (12%)

Query: 4   LWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDG 63
           LW+ L  NR++ IG+ +L +  L+A+ APL+  ++P                        
Sbjct: 15  LWQALFQNRLSWIGIGLLVMIVLVALFAPLIAPYDP------------------------ 50

Query: 64  WIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATV 123
            + +N+A           A+  LGT   GRDV S++ YG RVSL VGF A +    + + 
Sbjct: 51  -LQQNIAYRLEP----PSAEFWLGTDTYGRDVLSRLIYGTRVSLLVGFVAVMIAMVVGSA 105

Query: 124 IGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGA 183
           +GV AGY GG  D  +T  ++++L  P   L  ++AA +G A    + + I  T  A   
Sbjct: 106 LGVIAGYVGGITDRLITGFVDVLLSFPTLLLGLMVAAMLG-ASLENLIIAIAITEIAPFV 164

Query: 184 RVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLIS---IVGASFIGSVMYAIMME 240
           R+ R+ T+AL++++FV+A   LG    R++ + ILPN+IS   ++GA ++ +   AI  E
Sbjct: 165 RIARAPTIALKQRDFVEAGRSLGYGPGRLMTVHILPNMISEVLVLGALWMAT---AIRTE 221

Query: 241 ATISFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVD 299
           A++SF+GLG  P   +WG M   ++     ++ AWW  + P L++ L V  L+LL  A+ 
Sbjct: 222 ASLSFIGLGVPPPAPTWGSM---IREGFENILDAWWLTVFPSLAILLTVLALSLLGDALR 278

Query: 300 EIANPQLRSHK 310
           +  +P+ RS +
Sbjct: 279 DANDPKTRSER 289