Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., Dipeptide transport system permease protein DppC from Pseudomonas sp. DMC3

 Score =  115 bits (287), Expect = 2e-30
 Identities = 80/308 (25%), Positives = 143/308 (46%), Gaps = 28/308 (9%)

Query: 2   KALWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANP 61
           K  W+    N+ A+ G+  + L    A+ AP +  H P +      +Y  F++      P
Sbjct: 26  KEFWQAFSKNKGAVAGLLFMLLIIFCAIFAPWVAPHNPSE------QYRDFLL-----TP 74

Query: 62  DGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLA 121
             W+               +   +LGT  +GRD+ S++  G+R+SL +G  + +      
Sbjct: 75  PAWLEGG------------QMQFLLGTDELGRDLLSRLIQGSRLSLLIGLSSVVMSLIPG 122

Query: 122 TVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAW 181
            ++G+ AG+F   +   +   M+IML +P   L   + A +G  G +   + I   S   
Sbjct: 123 ILLGLFAGFFPKVVGPTIMRLMDIMLALPSLLLAVAIVAILG-PGLINTVIAIAVVSLPS 181

Query: 182 GARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEA 241
             R+ R+  M    +++V AA + G    R++FI +LPN ++ +      S   AI+  A
Sbjct: 182 YVRLTRAAVMGELNRDYVTAARLAGAGLPRLMFITVLPNCMAPLIVQATLSFSSAILDAA 241

Query: 242 TISFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDE 300
            + FLGLG  P T  WG ML    ++   +  AWW +  P L++ L V  + L+   + +
Sbjct: 242 ALGFLGLGVQPPTPEWGTML---ASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRD 298

Query: 301 IANPQLRS 308
             +P+L++
Sbjct: 299 ALDPKLKN 306