Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  117 bits (294), Expect = 3e-31
 Identities = 83/232 (35%), Positives = 124/232 (53%), Gaps = 20/232 (8%)

Query: 82  ADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGYFGGKIDDFLTA 141
           A ++LGT  +GRDV  ++ YG ++SLAVG  A +    +   IGV AG+ GG+ D FL  
Sbjct: 72  ARYLLGTDEIGRDVLLRLMYGGQISLAVGVLATLFGAVIGVAIGVLAGFVGGRTDAFLMR 131

Query: 142 AMNIMLVIPQYPLLFVLAAF----IGEAGPLT---------IALIIGCTSWAWGARVVRS 188
           A + M+ +P  PLL V+AA     +G    L          I +II    W   ARVVR+
Sbjct: 132 ATDCMIALPLVPLLVVMAAIDLSKLGVPHDLAQSPMVSFWRIVIIISLVDWTTIARVVRA 191

Query: 189 QTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGL 248
            T+ +R +++V +A V G S    I   +LPN+ + +  +   +V   I++E+T+SFLG+
Sbjct: 192 GTLTVRGQDYVLSARVSGGSGLYNILTHVLPNVATPIIVASTLTVSRVILLESTLSFLGV 251

Query: 249 G-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVD 299
           G  P T +WG ML N Q  ++        +LA    L + VT +A  NF  D
Sbjct: 252 GVMPPTPTWGNMLNNAQELATTA-----PMLAVYPGLLIFVTVIA-FNFLGD 297