Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  121 bits (303), Expect = 3e-32
 Identities = 80/217 (36%), Positives = 116/217 (53%), Gaps = 8/217 (3%)

Query: 84  HILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGYFGGKIDDFLTAAM 143
           H  GT   GRD+  +VA G R+SL VG  A +    + T+ G  +GY GGKID  +   +
Sbjct: 82  HYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKIDSVMMRLL 141

Query: 144 NIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGARVVRSQTMALREKEFVKAAE 203
            I+   P    + +L  F G+   L I + IG  SW   AR+VR QT++L+ KEF++AA+
Sbjct: 142 EILNSFPFMFFVILLVTFFGQ-NILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQ 200

Query: 204 VLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLGDPNTI-SWGIMLYN 262
           V G S+  I+   I+PN++ +V       V   I+ E+ +SFLGLG    + SWG +L +
Sbjct: 201 VGGVSTASIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSD 260

Query: 263 VQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVD 299
              ++SM +  W  LL P      LV  L   NF  D
Sbjct: 261 --GANSMEVSPWL-LLFPA---GFLVVTLFCFNFIGD 291