Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 281 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  134 bits (337), Expect = 3e-36
 Identities = 86/244 (35%), Positives = 137/244 (56%), Gaps = 7/244 (2%)

Query: 52  FVVKAAKANPDGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGF 111
           FVV A  A    +  + ++   RTL     A H  GT   GRD +++  YG ++SL VGF
Sbjct: 28  FVVAALCAGLSPYDPDRMSLGARTLPPD--AAHWFGTDEYGRDYFTRALYGGQISLMVGF 85

Query: 112 GAGITVCFLATVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIA 171
            A +    + TV+G  +GYFGG +D+ +  A++I++ IP + LL V+ A++ + G   I 
Sbjct: 86  LAMLFSTLIGTVVGTVSGYFGGWLDNLMMRAVDILMAIPAFFLLLVVNAYL-KPGVDNII 144

Query: 172 LIIGCTSWAWGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIG 231
           LII   +W   +R+VR++T++++E+E+V  A   GE   RII   I+P ++  +  +   
Sbjct: 145 LIISLLTWMNMSRLVRAETLSVKEREYVLYARASGEHPLRIIARHIIPGVLPTIIVAATL 204

Query: 232 SVMYAIMMEATISFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTG 290
           ++  AI+ME+T+SFLGLG      SWG ML N Q   S +  A W  + P + + L V  
Sbjct: 205 NIASAILMESTLSFLGLGVQAPAASWGSMLNNAQ---SYIGEASWLAMFPGILILLTVFS 261

Query: 291 LALL 294
             +L
Sbjct: 262 FNVL 265