Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 297 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  114 bits (284), Expect = 4e-30
 Identities = 86/308 (27%), Positives = 138/308 (44%), Gaps = 41/308 (13%)

Query: 2   KALWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANP 61
           K  W +LR + + ++G  I+     L VA+P +  H+P+                     
Sbjct: 22  KLFW-MLRQSPLTIVGGVIMIAMLFLMVASPWIVPHDPN--------------------- 59

Query: 62  DGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLA 121
                   A D      +  A H  GT  +GRD++S+V  G++ S+  G    +    + 
Sbjct: 60  --------ALDLTARLQAPSAQHWFGTDEVGRDLFSRVLTGSQQSITAGLAVVVIAGGIG 111

Query: 122 TVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAW 181
           +++G  +G  GG+ D  +   M+IML IP   L   LAA +G +      L I      +
Sbjct: 112 SLLGCLSGVLGGRGDAIIMRVMDIMLSIPSLVLTMALAAALGPS-LFNAMLAIAIVRIPF 170

Query: 182 GARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLIS--IVGASF-IGSVMYAIM 238
             R+ R QT+ +R+  +V+AA   G S W +I   IL N +   IV AS  IGS   AI+
Sbjct: 171 YVRLARGQTLVVRQFTYVQAARTFGASRWHLIRWHILRNALPPLIVQASLDIGS---AIL 227

Query: 239 MEATISFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFA 297
           M AT+ F+GLG    T  WG M   V    + ++  WW    P  ++ +   G  L    
Sbjct: 228 MAATLGFIGLGAQQPTAEWGAM---VAVGRNYVLDQWWYCAFPGAAILITAVGFNLFGDG 284

Query: 298 VDEIANPQ 305
           + ++ +P+
Sbjct: 285 IRDLLDPK 292