Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  122 bits (306), Expect = 1e-32
 Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 77  AMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGYFGGKID 136
           A   ++ H  GT   GRD+  +VA G R+SL VG  A +    + T+ G  +GY GGKID
Sbjct: 75  APDMESGHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKID 134

Query: 137 DFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGARVVRSQTMALREK 196
             +   + I+   P    + +L  F G+   L I + IG  SW   AR+VR QT++L+ K
Sbjct: 135 SVMMRLLEILNSFPFMFFVILLVTFFGQ-NILLIFVAIGMVSWLDMARIVRGQTLSLKRK 193

Query: 197 EFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLGDPNTI-S 255
           EF++AA+V G S+  I+   I+PN++ +V       V   I+ E+ +SFLGLG    + S
Sbjct: 194 EFIEAAQVGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSS 253

Query: 256 WGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVD 299
           WG +L +   ++SM +  W  LL P      LV  L   NF  D
Sbjct: 254 WGALLSD--GANSMEVSPWL-LLYPA---GFLVVTLFCFNFIGD 291