Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., putative D,D-dipeptide transport system permease protein DdpC from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  117 bits (292), Expect = 5e-31
 Identities = 86/308 (27%), Positives = 142/308 (46%), Gaps = 41/308 (13%)

Query: 2   KALWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANP 61
           K +W +L+G+ + + G  I+ L  L+ + +P L +H+P+                     
Sbjct: 22  KLVW-MLKGSPLTVTGAVIIVLMLLMMIFSPWLATHDPN--------------------- 59

Query: 62  DGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLA 121
                   A D  T  +   A H  GT  +GRD++S+V  G++ S+  G         + 
Sbjct: 60  --------AIDLTTRLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIG 111

Query: 122 TVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAW 181
           +++G  +G  GG+ D  +   M+IML IP   L   LAA +G +      L I      +
Sbjct: 112 SLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPS-LFNAMLAIAIVRIPF 170

Query: 182 GARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLIS--IVGASF-IGSVMYAIM 238
             R+ R Q + +R+  +V+AA+  G S W +I   IL N +   IV AS  IGS   AI+
Sbjct: 171 YVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGS---AIL 227

Query: 239 MEATISFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFA 297
           M AT+ F+GLG    +  WG M+ N     + ++  WW    P  ++ L   G  L    
Sbjct: 228 MAATLGFIGLGAQQPSAEWGAMVAN---GRNYVLDQWWYCAFPGAAILLTAVGFNLFGDG 284

Query: 298 VDEIANPQ 305
           + ++ +P+
Sbjct: 285 IRDLLDPK 292