Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., dipeptide ABC transporter permease DppC from Dickeya dadantii 3937

 Score =  122 bits (307), Expect = 9e-33
 Identities = 90/310 (29%), Positives = 146/310 (47%), Gaps = 32/310 (10%)

Query: 1   MKALWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKAN 60
           ++  W   + N+ A++G+  + L  ++A+ A +L  H P ++            + A   
Sbjct: 19  LQEFWHYFKRNKGAVVGLVYIILMLVVAIGASVLAPHSPAEQ-----------FRDALLK 67

Query: 61  PDGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFL 120
           P  W                   +I GT  +GRDV S++ YGAR+SL VG    +    L
Sbjct: 68  PPVW------------QEGGSWQYIFGTDDVGRDVLSRLMYGARLSLLVGCLVVVMSLIL 115

Query: 121 ATVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWA 180
             V G+ AGYFGG +D  +   ++IML +P   L  VL A  G +  +  +L +   S  
Sbjct: 116 GVVFGLVAGYFGGAVDAAIMRLVDIMLALPSLLLALVLVAIFGPS-IVNASLALTFVSLP 174

Query: 181 WGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLIS--IVGASFIGSVMYAIM 238
              R+ R+  +    +++V A+ V G    R +F+ ILPN ++  IV AS       AI+
Sbjct: 175 HYVRLTRAAVLVEVNRDYVTASRVAGAGPLRQMFVNILPNCLAPLIVQASM--GFSNAIL 232

Query: 239 MEATISFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFA 297
             A + FLG+G  P T  WG ML +V   +     AWW +  P L++ L V    L+   
Sbjct: 233 DMAALGFLGMGAQPPTPEWGTMLSDVLQFAQ---SAWWVVTFPGLAILLTVLAFNLMGDG 289

Query: 298 VDEIANPQLR 307
           + +  +P+L+
Sbjct: 290 LRDALDPKLK 299