Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., putative D,D-dipeptide transport system permease protein DdpC from Azospirillum sp. SherDot2

 Score =  122 bits (306), Expect = 1e-32
 Identities = 84/234 (35%), Positives = 127/234 (54%), Gaps = 14/234 (5%)

Query: 82  ADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGYFGGKIDDFLTA 141
           A H  GT   GRDV S+V  GAR+SL VG    +    L T++G++AGY    +D  L  
Sbjct: 78  AAHWFGTDEYGRDVLSRVMLGARLSLLVGLLVVVVATVLGTLLGLAAGYIR-PLDGLLMR 136

Query: 142 AMNIMLVIPQYPLLFVLAAFIGEAGP--LTIALIIGCTSWAWGARVVRSQTMALREKEFV 199
             + ++  P    + +  AF+   GP    + L +G       ARVVR+  + +RE  F+
Sbjct: 137 LTDALMAFPD---ILLAIAFMAALGPSLYNVVLALGIVYTPRVARVVRAACLVVREMPFI 193

Query: 200 KAAEVLGESSWRIIFIEILPNLIS--IVGASFIGSVMYAIMMEATISFLGLG-DPNTISW 256
           +AA  LG S+ RI+F+ ILPNL+S  +V A+FI    YAI+ EA +SFLG+G  P T +W
Sbjct: 194 EAATALGASTPRIVFLHILPNLMSPILVQATFI--FAYAILTEAALSFLGVGVPPTTPTW 251

Query: 257 GIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQLRSHK 310
           G M+ + Q        A W +L P  ++ L V  L ++   + +  +P+L+  K
Sbjct: 252 GNMIASAQQYFQQ---ADWLILFPGCAIVLTVLSLQIVGDGLRDALDPRLQKAK 302