Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., ABC transporter, membrane spanning protein (peptide) from Agrobacterium fabrum C58

 Score =  156 bits (395), Expect = 6e-43
 Identities = 110/300 (36%), Positives = 152/300 (50%), Gaps = 38/300 (12%)

Query: 11  NRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGWIAENLA 70
           N  A  G+  L +  LLA+ AP L   +P    G    +P         NPD        
Sbjct: 39  NPGATAGLMTLSIIMLLALLAPWLAPGDPQSIVGPERLWPG-------ENPD-------- 83

Query: 71  TDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGY 130
                         +LGT  +GR VW+ + +GARVSL VG  A I       +IG  AGY
Sbjct: 84  -------------FLLGTDSLGRSVWAGLVHGARVSLLVGISATILGLVFGGLIGAIAGY 130

Query: 131 FGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIG--CTSWAWGARVVRS 188
            GG IDD +   + I   IP + LL VL AF   A P    +I+G    SWA  AR+ R+
Sbjct: 131 CGGWIDDLIVRFIEIFQTIPSFVLLVVLVAF---ATPTIGTVIVGIALVSWAMIARLTRA 187

Query: 189 QTMALREKEFVKAAEVLGESSWRIIFIEILPN-LISIVGASFIGSVMYAIMMEATISFLG 247
           +  ++REK+FV AA   G S+ RII  EILPN L S++  S I  V  AI+ME+ +SF+G
Sbjct: 188 EFRSIREKDFVMAARASGISAPRIILQEILPNALPSLIVVSSI-MVASAILMESALSFMG 246

Query: 248 LGDPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQLR 307
           L DPNT++WG M   +  S  ++   W+  L P   + L V  L L+   +++  NP++R
Sbjct: 247 LSDPNTVTWGSM---IGASREVIRSHWYLTLMPGGCIVLTVLALNLIGDGLNDALNPRIR 303