Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 268 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  125 bits (314), Expect = 1e-33
 Identities = 92/300 (30%), Positives = 152/300 (50%), Gaps = 36/300 (12%)

Query: 8   LRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGWIAE 67
           ++ N+ A+ G+ I+  F +LA+AAP+L                              IA+
Sbjct: 1   MKRNKSALAGLIIVLFFAVLAIAAPILP-----------------------------IAD 31

Query: 68  NLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVS 127
            +AT    +  +  A H LGT  +GRD+ S++ YGAR SL  G  + +    +    G+ 
Sbjct: 32  PVATSWSAIRKAPSAAHWLGTDDLGRDILSRMIYGARASLMAGVVSVMIAVVIGVPFGLI 91

Query: 128 AGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALI-IGCTSWAWGARVV 186
           AGYFGG +D  ++     +L +P   +   LAAF+G +  LT A+I IG ++     R+ 
Sbjct: 92  AGYFGGWVDMVISRITEALLAMPFLIMAIALAAFLGPS--LTNAMIAIGLSAMPIFVRLT 149

Query: 187 RSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFL 246
           R Q +A++ +++V+ A  +G +   I+   ILPN+ + +      +V  AI+ EA++SFL
Sbjct: 150 RGQVLAVKMEDYVEGARSIGLNHIDIMTRYILPNVFAPIIVQATLTVATAIIAEASLSFL 209

Query: 247 GLGDPNTI-SWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQ 305
           GLG      SWG ML    T+ + L  A W  L P +++ L+V G  LL   + +  +P+
Sbjct: 210 GLGQQAPAPSWGSML---NTAKNFLSQAPWMTLWPGIAIFLVVIGFNLLGDGLRDALDPR 266