Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  117 bits (293), Expect = 4e-31
 Identities = 90/314 (28%), Positives = 150/314 (47%), Gaps = 35/314 (11%)

Query: 5   WKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGW 64
           W   R ++ A I   +L +  L A+ AP +          NP++          A+ D W
Sbjct: 26  WSFSR-SKSAKISALVLAILILAAIFAPWIAPQ-------NPYD---------GASLDMW 68

Query: 65  IAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVI 124
            AE     +       +   +LGT   GRD+ S + YG R+S+ +G  + +    +    
Sbjct: 69  KAELPPIWQE----GGEWPFLLGTDTQGRDMLSAILYGTRISIVIGVASVVLSLVIGMTA 124

Query: 125 GVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGP---------LTIALIIG 175
           G+ AGYFGG  D  L    +I L IP   +  +++  + +  P           + L I 
Sbjct: 125 GLVAGYFGGFADGLLMRIGDITLSIPTILVAILVSTVVRQMLPDSLREVGASAVLILAIA 184

Query: 176 CTSWAWGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMY 235
            ++W   AR VR+Q +    K++V+AA+++G  + RI+   ILPN ++ +  +   +   
Sbjct: 185 LSAWVQYARTVRAQAIVETGKDYVQAAKLIGVPARRIMAAHILPNTLTPIMVAATLNFGM 244

Query: 236 AIMMEATISFLGLG-DPNTISWGIMLYNVQTSSSMLI-GAWWELLAPCLSLTLLVTGLAL 293
           AI+ EAT+SFLG+G  P+  S G +   ++  +  L  G+WW +L P   L LLV  + L
Sbjct: 245 AILTEATLSFLGIGMPPSQPSLGTL---IRIGNQFLFSGSWWIVLFPVFQLCLLVVTVNL 301

Query: 294 LNFAVDEIANPQLR 307
           L   + +  NP+LR
Sbjct: 302 LGDWLRDALNPKLR 315