Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  133 bits (334), Expect = 6e-36
 Identities = 85/230 (36%), Positives = 125/230 (54%), Gaps = 5/230 (2%)

Query: 82  ADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGYFGGKIDDFLTA 141
           A H LGT  +GRDV ++V  G ++SL VGF + I        +G+ AGY+ G  D  +  
Sbjct: 57  AAHPLGTDPLGRDVLARVVAGGKISLLVGFTSVIGAVIFGVAVGLVAGYYRGFWDMLVMR 116

Query: 142 AMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGARVVRSQTMALREKEFVKA 201
             +I L +P   L     A +G +   TI L+I  + W   AR+VR   + LRE+EF+ +
Sbjct: 117 FADIQLAMPFILLAITFIAIVGGSLTNTIILLI-ISQWVQYARLVRGSVLTLREREFILS 175

Query: 202 AEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLG-DPNTISWGIML 260
           A  +G   WRII   +LPNLI  V      +V   I++E++++FLGLG DP   SWG ML
Sbjct: 176 ARAIGVKDWRIILQHLLPNLIGPVIVLMTLNVANNILLESSLTFLGLGVDPTIPSWGGML 235

Query: 261 YNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQLRSHK 310
            + +T    L  AWW  + P L++ L V GL LL   + +  +P  R+ +
Sbjct: 236 ADGRT---YLQTAWWVSVFPGLAILLTVLGLNLLGDWLRDSLDPTGRTSR 282