Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  119 bits (299), Expect = 8e-32
 Identities = 79/303 (26%), Positives = 140/303 (46%), Gaps = 32/303 (10%)

Query: 4   LWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDG 63
           +W+    NR+A++G+ I+     +A+ A +L  H P +            ++ A+  P G
Sbjct: 35  IWRRFSENRLALLGLVIIIALLFVALFADVLAPHNPVQGD----------LRNARLLPPG 84

Query: 64  WIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATV 123
                             A ++LGT   GRD+ S++ +G+R++L V     I    +  +
Sbjct: 85  -----------------TAGYLLGTDDQGRDILSRLIHGSRLTLFVVLLVAIIAAPIGLI 127

Query: 124 IGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGA 183
           +G  +GY GG +D  L    +I L  P+  L   L A +G  G     L I  TSW   A
Sbjct: 128 VGTVSGYAGGWVDAILMRITDIFLAFPKLVLALALVAALG-PGIENAVLAIAVTSWPPYA 186

Query: 184 RVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATI 243
           R+ R++TM  R  +F+ A +++G S +RI+   ++P  +S +       +   I+  A +
Sbjct: 187 RIARAETMTFRNSDFIAAVKLMGASPFRIVLKHVMPLCLSSLIVRVTLDMAGIILTAAGL 246

Query: 244 SFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIA 302
            FLGLG  P    WG M   + +    ++  WW    P +++ ++  G  LL   + +  
Sbjct: 247 GFLGLGAQPPLPEWGAM---IASGRRFILDQWWVAAMPGIAILIVSLGFNLLGDGLRDAL 303

Query: 303 NPQ 305
           +P+
Sbjct: 304 DPK 306